trace
Tandem Repeat Analysis by Capillary Electrophoresis
A pipeline for short tandem repeat instability analysis from fragment analysis data. Inputs of fsa files or peak tables, and a user supplied metadata data-frame. The package identifies ladders, calls peaks, identifies the modal peaks, calls repeats, then calculates repeat instability metrics (e.g. expansion index from Lee et al. (2010) <doi:10.1186/1752-0509-4-29>).
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.0.0 |
rolling linux/jammy R-4.5 | trace_1.0.0.tar.gz |
1.3 MiB |
1.0.0 |
rolling linux/noble R-4.5 | trace_1.0.0.tar.gz |
1.3 MiB |
1.0.0 |
rolling source/ R- | trace_1.0.0.tar.gz |
837.3 KiB |
1.0.0 |
latest linux/jammy R-4.5 | trace_1.0.0.tar.gz |
1.3 MiB |
1.0.0 |
latest linux/noble R-4.5 | trace_1.0.0.tar.gz |
1.3 MiB |
1.0.0 |
latest source/ R- | trace_1.0.0.tar.gz |
837.3 KiB |
1.0.0 |
2026-04-26 source/ R- | trace_1.0.0.tar.gz |
837.3 KiB |
1.0.0 |
2026-04-23 source/ R- | trace_1.0.0.tar.gz |
837.3 KiB |
1.0.0 |
2026-04-09 windows/windows R-4.5 | trace_1.0.0.zip |
1.3 MiB |
0.6.0 |
2025-04-20 source/ R- | trace_0.6.0.tar.gz |
816.7 KiB |