phylepic
Combined Visualisation of Phylogenetic and Epidemiological Data
A collection of utilities and 'ggplot2' extensions to assist with visualisations in genomic epidemiology. This includes the 'phylepic' chart, a visual combination of a phylogenetic tree and a matched epidemic curve. The included 'ggplot2' extensions such as date axes binned by week are relevant for other applications in epidemiology and beyond. The approach is described in Suster et al. (2024) <doi:10.1101/2024.04.02.24305229>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.3.0 |
rolling linux/jammy R-4.5 | phylepic_0.3.0.tar.gz |
1.1 MiB |
0.3.0 |
rolling linux/noble R-4.5 | phylepic_0.3.0.tar.gz |
1.1 MiB |
0.3.0 |
rolling source/ R- | phylepic_0.3.0.tar.gz |
993.7 KiB |
0.3.0 |
latest linux/jammy R-4.5 | phylepic_0.3.0.tar.gz |
1.1 MiB |
0.3.0 |
latest linux/noble R-4.5 | phylepic_0.3.0.tar.gz |
1.1 MiB |
0.3.0 |
latest source/ R- | phylepic_0.3.0.tar.gz |
993.7 KiB |
0.3.0 |
2026-04-26 source/ R- | phylepic_0.3.0.tar.gz |
993.7 KiB |
0.3.0 |
2026-04-23 source/ R- | phylepic_0.3.0.tar.gz |
993.7 KiB |
0.3.0 |
2026-04-09 windows/windows R-4.5 | phylepic_0.3.0.zip |
1.1 MiB |
0.2.0 |
2025-04-20 source/ R- | phylepic_0.2.0.tar.gz |
644.8 KiB |