pepdiff
Differential Abundance Analysis for Phosphoproteomics Data
Provides tools for analyzing differential abundance in proteomics experiments. Implements S3 classes for data management and supports Generalized Linear Models (GLM; Nelder and Wedderburn (1972) <doi:10.2307/2344614>), Aligned Rank Transform (ART; Wobbrock et al. (2011) <doi:10.1145/1978942.1978963>), and pairwise test methods for statistical analysis. Includes visualization functions for Principal Component Analysis (PCA), volcano plots, and heatmaps.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.0.0 |
rolling linux/jammy R-4.5 | pepdiff_1.0.0.tar.gz |
1.7 MiB |
1.0.0 |
rolling linux/noble R-4.5 | pepdiff_1.0.0.tar.gz |
1.7 MiB |
1.0.0 |
rolling source/ R- | pepdiff_1.0.0.tar.gz |
1.5 MiB |
1.0.0 |
latest linux/jammy R-4.5 | pepdiff_1.0.0.tar.gz |
1.7 MiB |
1.0.0 |
latest linux/noble R-4.5 | pepdiff_1.0.0.tar.gz |
1.7 MiB |
1.0.0 |
latest source/ R- | pepdiff_1.0.0.tar.gz |
1.5 MiB |
1.0.0 |
2026-04-26 source/ R- | pepdiff_1.0.0.tar.gz |
1.5 MiB |
1.0.0 |
2026-04-23 source/ R- | pepdiff_1.0.0.tar.gz |
1.5 MiB |
1.0.0 |
2026-04-09 windows/windows R-4.5 | pepdiff_1.0.0.zip |
1.7 MiB |