nodeSub
Simulate DNA Alignments Using Node Substitutions
Simulate DNA sequences for the node substitution model. In the node substitution model, substitutions accumulate additionally during a speciation event, providing a potential mechanistic explanation for substitution rate variation. This package provides tools to simulate such a process, simulate a reference process with only substitutions along the branches, and provides tools to infer phylogenies from alignments. More information can be found in Janzen (2021) <doi:10.1093/sysbio/syab085>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.2.9 |
rolling linux/jammy R-4.5 | nodeSub_1.2.9.tar.gz |
200.2 KiB |
1.2.9 |
rolling linux/noble R-4.5 | nodeSub_1.2.9.tar.gz |
78.2 KiB |
1.2.9 |
rolling source/ R- | nodeSub_1.2.9.tar.gz |
78.2 KiB |
1.2.9 |
latest linux/jammy R-4.5 | nodeSub_1.2.9.tar.gz |
200.2 KiB |
1.2.9 |
latest linux/noble R-4.5 | nodeSub_1.2.9.tar.gz |
78.2 KiB |
1.2.9 |
latest source/ R- | nodeSub_1.2.9.tar.gz |
78.2 KiB |
1.2.9 |
2026-04-26 source/ R- | nodeSub_1.2.9.tar.gz |
78.2 KiB |
1.2.9 |
2026-04-23 source/ R- | nodeSub_1.2.9.tar.gz |
78.2 KiB |
1.2.9 |
2026-04-09 windows/windows R-4.5 | nodeSub_1.2.9.zip |
521.3 KiB |
1.2.8 |
2025-04-20 source/ R- | nodeSub_1.2.8.tar.gz |
43.3 KiB |