immunarch
Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design in R
A comprehensive analytics framework for building reproducible pipelines on T-cell and B-cell immune receptor repertoire data. Delivers multi-modal immune profiling (bulk, single-cell, CITE-seq/AbSeq, spatial, immunogenicity data), feature engineering (ML-ready feature tables and matrices), and biomarker discovery workflows (cohort comparisons, longitudinal tracking, repertoire similarity, enrichment). Provides a user-friendly interface to widely used AIRR methods — clonality/diversity, V(D)J usage, similarity, annotation, tracking, and many more. Think Scanpy or Seurat, but for AIRR data, a.k.a. Adaptive Immune Receptor Repertoire, VDJ-seq, RepSeq, or VDJ sequencing data. A successor to our previously published "tcR" R package (Nazarov 2015).
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.10.3 |
rolling linux/jammy R-4.5 | immunarch_0.10.3.tar.gz |
3.3 MiB |
0.10.3 |
rolling linux/noble R-4.5 | immunarch_0.10.3.tar.gz |
3.3 MiB |
0.10.3 |
rolling source/ R- | immunarch_0.10.3.tar.gz |
2.4 MiB |
0.10.3 |
latest source/ R- | immunarch_0.10.3.tar.gz |
2.4 MiB |
0.10.3 |
latest linux/jammy R-4.5 | immunarch_0.10.3.tar.gz |
3.3 MiB |
0.10.3 |
latest linux/noble R-4.5 | immunarch_0.10.3.tar.gz |
3.3 MiB |
0.10.3 |
2026-04-26 source/ R- | immunarch_0.10.3.tar.gz |
2.4 MiB |
0.10.3 |
2026-04-23 source/ R- | immunarch_0.10.3.tar.gz |
2.4 MiB |
0.10.3 |
2026-04-09 windows/windows R-4.5 | immunarch_0.10.3.zip |
3.6 MiB |
0.9.1 |
2025-04-20 source/ R- | immunarch_0.9.1.tar.gz |
4.7 MiB |