gap

Genetic Analysis Package

As first reported [Zhao, J. H. 2007. "gap: Genetic Analysis Package". J Stat Soft 23(8):1-18. <doi:10.18637/jss.v023.i08>], it is designed as an integrated package for genetic data analysis of both population and family data. Currently, it contains functions for sample size calculations of both population-based and family-based designs, probability of familial disease aggregation, kinship calculation, statistics in linkage analysis, and association analysis involving genetic markers including haplotype analysis with or without environmental covariates. Over years, the package has been developed in-between many projects hence also in line with the name (gap).

README

The data/ and demo/ directories are with the package root; the following
items are available from there upon installation.

Name           | Description
---------------|----------------------------------------------
CITATION       | Citation information
JAGS/          | JAGS script
REFERENCES.bib | BibTeX bibilgraphy for Rd
ms/            | ms source code associated with read.ms.output
scripts/       | miscellaneous codes
shinygap/      | shiny App

Versions across snapshots

Dependencies (latest)