ct

# Camera Trap R Package <a href="https://stangandaho.github.io/ct/"><img src="man/figures/logo.png" align="right" height="100" alt="ct website" /></a>

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## Overview
Camera traps are an essential tool for wildlife monitoring and ecological research, 
especially for species identification, biodiversity assessment, activity pattern analysis, 
occupancy modeling, *density/abundance estimation*, and among other.

Processing and analyzing camera trap data in R often requires multiple steps, 
from cleaning raw data to statistical modeling and visualization. The **ct** 
R package addresses these challenges by providing a **modern, tidyverse-friendly workflow**. 
It enables users to efficiently process data, and estimate density or abundance
with several (~6) documented methods. Additionally, it integrates 
seamlessly with **ggplot2**, allowing users to generate highly customizable 
visualizations.

## Key Features

The `ct` package provides a comprehensive suite of 60+ functions covering the 
complete camera trap data analysis workflow. **Population density estimation** 
is supported through Random Encounter Models, (REM), Camera Trap Distance Sampling (CTDS)
Time-To-Event (TTE), Space-To-Event (STE), Instantaneous Sampling Estimator (ISE),
and Random Encounter and Staying Time (REST/RAD-REST). **Data management** capabilities include 
filtering independent detections, timestamp correction, and interactive spatial validation. 
**Community ecology**  functions enable activity pattern analysis, biodiversity index assessment, and 
occupancy modeling input preparation. **Quality control** tools include detecting temporal gaps, 
monitoring deployment status, and taxonomic validation.  

<a href='https://stangandaho.github.io/ct/'><img src="https://raw.githubusercontent.com/stangandaho/ct/main/man/figures/ct_r_package_workflow.svg" align="centre"/></a>

**For a full overview of all available functions, please visit the [ct website](https://stangandaho.github.io/ct/reference/index.html)**

## Installation:
You can install *ct* directly from GitHub:

```R
# Install pak firstly if not installed
if (!requireNamespace("pak", quietly = TRUE)) {
  install.packages("pak", dependencies = TRUE)
}

# Install ct from GitHub
pak::pkg_install("stangandaho/ct")
```

## Code of conduct
Please note that this project is based on the [Contributor Covenant v2.1](https://github.com/stangandaho/ct/blob/main/CODE_OF_CONDUCT.md). 
By participating in this project you agree to abide by its terms.

## Getting help
If you encounter a clear bug, please file an [issue](https://github.com/stangandaho/ct/issues) with a minimal reproducible 
example. For questions and other discussion, please use [relevant section](https://github.com/stangandaho/ct/discussions).

## Funding
The development of the ct package is supported by the R Consortium Infrastructure 
Steering Committee (ISC) under grant 25-ISC-1-04. This funding enables the creation 
of comprehensive statistical tools for camera trap data analysis, including population 
density estimation methods, and standardized data integration workflows.