craftgrn
Integrative Chromatin Accessibility and RNA Framework for Gene Regulatory Networks
Provides a reproducible framework for constructing and comparing gene regulatory networks by integrating chromatin accessibility footprint scores with matched RNA expression data. It implements context-specific enhancer-gene linking, transcription factor focused network analysis, differential network analysis, and regulatory topic modeling workflows for systematic exploration of gene regulation across conditions. Methodological background is available at <doi:10.1038/s41467-020-18035-1>, <https://www.jmlr.org/papers/v3/blei03a.html>, and <doi:10.48550/arXiv.1510.08628>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.1.6 |
rolling linux/jammy R-4.5 | craftgrn_0.1.6.tar.gz |
2.2 MiB |
0.1.6 |
rolling linux/noble R-4.5 | craftgrn_0.1.6.tar.gz |
2.2 MiB |
0.1.6 |
rolling source/ R- | craftgrn_0.1.6.tar.gz |
772.3 KiB |
0.1.6 |
latest linux/jammy R-4.5 | craftgrn_0.1.6.tar.gz |
2.2 MiB |
0.1.6 |
latest linux/noble R-4.5 | craftgrn_0.1.6.tar.gz |
2.2 MiB |
0.1.6 |
latest source/ R- | craftgrn_0.1.6.tar.gz |
772.3 KiB |
0.1.6 |
2026-04-23 source/ R- | craftgrn_0.1.6.tar.gz |
0 B |