SCpubr
Generate Publication Ready Visualizations of Single Cell Transcriptomics Data
A system that provides a streamlined way of generating publication ready plots for known Single-Cell transcriptomics data in a “publication ready” format. This is, the goal is to automatically generate plots with the highest quality possible, that can be used right away or with minimal modifications for a research article.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
3.0.1 |
rolling linux/jammy R-4.5 | SCpubr_3.0.1.tar.gz |
2.2 MiB |
3.0.1 |
rolling linux/noble R-4.5 | SCpubr_3.0.1.tar.gz |
2.2 MiB |
3.0.1 |
rolling source/ R- | SCpubr_3.0.1.tar.gz |
1.5 MiB |
3.0.1 |
latest linux/jammy R-4.5 | SCpubr_3.0.1.tar.gz |
2.2 MiB |
3.0.1 |
latest linux/noble R-4.5 | SCpubr_3.0.1.tar.gz |
2.2 MiB |
3.0.1 |
latest source/ R- | SCpubr_3.0.1.tar.gz |
1.5 MiB |
3.0.1 |
2026-04-26 source/ R- | SCpubr_3.0.1.tar.gz |
1.5 MiB |
3.0.1 |
2026-04-23 source/ R- | SCpubr_3.0.1.tar.gz |
1.5 MiB |
3.0.1 |
2026-04-09 windows/windows R-4.5 | SCpubr_3.0.1.zip |
2.2 MiB |
2.0.2 |
2025-04-20 source/ R- | SCpubr_2.0.2.tar.gz |
1.4 MiB |
Dependencies (latest)
Suggests
- assertthat
- circlize
- cli
- cluster
- colorspace
- ComplexHeatmap
- covr
- decoupleR
- dplyr (>= 1.1.0)
- enrichplot
- forcats
- ggalluvial (>= 0.12.5)
- ggbeeswarm
- ggdist
- ggExtra
- ggh4x
- ggplot2 (>= 3.4.0)
- ggplotify
- ggrastr
- ggrepel
- ggridges
- ggsignif
- graphics
- infercnv
- KernSmooth
- knitr
- labeling
- magrittr
- MASS
- Matrix
- methods
- Nebulosa
- org.Hs.eg.db
- patchwork
- pheatmap
- plyr
- purrr
- qpdf
- RColorBrewer
- rjags
- rlang
- rmarkdown
- scales
- scattermore
- Seurat
- SeuratObject
- sf
- stringr
- svglite
- testthat (>= 3.0.0)
- tibble
- tidyr
- UCell
- viridis
- withr