PhenotypeR
Assess Study Cohorts Using a Common Data Model
Phenotype study cohorts in data mapped to the Observational Medical Outcomes Partnership Common Data Model. Diagnostics are run at the database, code list, cohort, and population level to assess whether study cohorts are ready for research.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.4.0 |
rolling linux/jammy R-4.5 | PhenotypeR_0.4.0.tar.gz |
715.7 KiB |
0.4.0 |
rolling linux/noble R-4.5 | PhenotypeR_0.4.0.tar.gz |
715.6 KiB |
0.4.0 |
rolling source/ R- | PhenotypeR_0.4.0.tar.gz |
1.9 MiB |
0.4.0 |
latest linux/jammy R-4.5 | PhenotypeR_0.4.0.tar.gz |
715.7 KiB |
0.4.0 |
latest linux/noble R-4.5 | PhenotypeR_0.4.0.tar.gz |
715.6 KiB |
0.4.0 |
latest source/ R- | PhenotypeR_0.4.0.tar.gz |
1.9 MiB |
0.4.0 |
2026-04-26 source/ R- | PhenotypeR_0.4.0.tar.gz |
1.9 MiB |
0.4.0 |
2026-04-23 source/ R- | PhenotypeR_0.4.0.tar.gz |
1.9 MiB |
0.3.4 |
2026-04-09 windows/windows R-4.5 | PhenotypeR_0.3.4.zip |
549.5 KiB |
0.1.4 |
2025-04-20 source/ R- | PhenotypeR_0.1.4.tar.gz |
350.4 KiB |
Dependencies (latest)
Imports
- cli
- clock
- CodelistGenerator (>= 4.0.2)
- CohortCharacteristics (>= 1.1.2)
- CohortConstructor (>= 0.6.2)
- dplyr
- DrugUtilisation (>= 1.1.0)
- IncidencePrevalence (>= 1.2.0)
- MeasurementDiagnostics (>= 0.3.0)
- omopgenerics (>= 1.2.0)
- OmopSketch (>= 1.0.1)
- PatientProfiles (>= 1.4.5)
- purrr
- readr
- rlang
- vctrs
Suggests
- CDMConnector (>= 1.6.1)
- duckdb
- DBI
- gt
- omock
- testthat (>= 3.0.0)
- knitr
- glue
- RPostgres
- ggplot2
- stringr
- shiny (>= 1.11.1)
- DiagrammeR
- DiagrammeRsvg
- reactable
- rsvg
- sortable
- shinycssloaders
- here
- DT
- bslib
- shinyWidgets
- plotly
- tidyr
- scales
- usethis
- rmarkdown
- CohortSurvival (>= 1.1.0)
- ellmer
- htmltools
- visOmopResults (>= 1.4.2)
- rsconnect
- cpp11
- progress
- qs2
- lubridate
- systemfonts
- officer
- fs
- OmopConstructor