CoNI
Correlation Guided Network Integration (CoNI)
Integrates two numerical omics data sets from the same samples using partial correlations. The output can be represented as a network, bipartite graph or a hypergraph structure. The method used in the package refers to Klaus et al (2021) <doi:10.1016/j.molmet.2021.101295>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.1.0 |
rolling source/ R- | CoNI_0.1.0.tar.gz |
941.7 KiB |
0.1.0 |
rolling linux/jammy R-4.5 | CoNI_0.1.0.tar.gz |
941.7 KiB |
0.1.0 |
rolling linux/noble R-4.5 | CoNI_0.1.0.tar.gz |
941.7 KiB |
0.1.0 |
latest source/ R- | CoNI_0.1.0.tar.gz |
941.7 KiB |
0.1.0 |
latest linux/jammy R-4.5 | CoNI_0.1.0.tar.gz |
941.7 KiB |
0.1.0 |
latest linux/noble R-4.5 | CoNI_0.1.0.tar.gz |
941.7 KiB |
0.1.0 |
2026-04-26 source/ R- | CoNI_0.1.0.tar.gz |
941.7 KiB |
0.1.0 |
2026-04-23 source/ R- | CoNI_0.1.0.tar.gz |
941.7 KiB |
0.1.0 |
2025-04-20 source/ R- | CoNI_0.1.0.tar.gz |
941.7 KiB |
Dependencies (latest)
Imports
- igraph (>= 1.2.6)
- doParallel (>= 1.0.16)
- cocor (>= 1.1.3)
- ggplot2 (>= 3.3.3)
- forcats (>= 0.5.1)
- dplyr (>= 1.0.5)
- data.table (>= 1.13.7)
- tibble (>= 3.1.0)
- foreach (>= 1.5.1)
- genefilter (>= 1.72.1)
- ggrepel (>= 0.9.1)
- gplots (>= 3.1.1)
- gridExtra (>= 2.3)
- plyr (>= 1.8.6)
- ppcor (>= 1.1)
- tidyr (>= 1.1.3)
- Hmisc (>= 4.4.2)
- methods (>= 4.0.3)
- rlang (>= 0.4.10)
- tidyselect (>= 1.1.0)
Suggests
- kableExtra (>= 1.3.2)
- knitr (>= 1.31)
- rmarkdown (>= 2.6)