tidyGenR
Tidy Multilocus Amplicon Genotypes
Variant determination and genotyping from high throughput sequences from multilocus amplicon libraries, typically sequenced in Illumina MiSeq or similar. It provides a set of core functions for the central steps: demultiplex by locus, truncate reads, variant calling, and genotype calling. Additionally, it provides a set of functions for diagnosis and estimation of best running parameters and multiple extensions for genotype/variants manipulation and reformatting. Output variants and genotypes are output in 'tidy' format, thus facilitating reformatting, manipulation and potential connection to other R packages.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.1.7 |
rolling linux/jammy R-4.5 | tidyGenR_0.1.7.tar.gz |
1.5 MiB |
0.1.7 |
rolling linux/noble R-4.5 | tidyGenR_0.1.7.tar.gz |
1.5 MiB |
0.1.7 |
rolling source/ R- | tidyGenR_0.1.7.tar.gz |
1.5 MiB |
0.1.7 |
latest linux/jammy R-4.5 | tidyGenR_0.1.7.tar.gz |
1.5 MiB |
0.1.7 |
latest linux/noble R-4.5 | tidyGenR_0.1.7.tar.gz |
1.5 MiB |
0.1.7 |
latest source/ R- | tidyGenR_0.1.7.tar.gz |
1.5 MiB |
0.1.7 |
2026-04-26 source/ R- | tidyGenR_0.1.7.tar.gz |
1.5 MiB |
0.1.7 |
2026-04-23 source/ R- | tidyGenR_0.1.7.tar.gz |
1.5 MiB |