survinger
Design-Adjusted Inference for Pathogen Lineage Surveillance
Provides tools for optimizing sequencing resource allocation and estimating pathogen lineage prevalence under real-world genomic surveillance conditions. Implements constrained allocation optimization for limited sequencing capacity across multiple regions and sample sources. Includes Horvitz-Thompson and post-stratified estimators that account for unequal sequencing rates, delay-adjusted nowcasting for right-censored reporting data, and combined design-weighted delay-corrected inference with uncertainty propagation.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.1.1 |
rolling linux/jammy R-4.5 | survinger_0.1.1.tar.gz |
606.0 KiB |
0.1.1 |
rolling linux/noble R-4.5 | survinger_0.1.1.tar.gz |
605.9 KiB |
0.1.1 |
rolling source/ R- | survinger_0.1.1.tar.gz |
1.6 MiB |
0.1.1 |
latest linux/jammy R-4.5 | survinger_0.1.1.tar.gz |
606.0 KiB |
0.1.1 |
latest linux/noble R-4.5 | survinger_0.1.1.tar.gz |
605.9 KiB |
0.1.1 |
latest source/ R- | survinger_0.1.1.tar.gz |
1.6 MiB |
0.1.1 |
2026-04-26 source/ R- | survinger_0.1.1.tar.gz |
1.6 MiB |
0.1.1 |
2026-04-23 source/ R- | survinger_0.1.1.tar.gz |
1.6 MiB |
0.1.1 |
2026-04-09 windows/windows R-4.5 | survinger_0.1.1.zip |
613.1 KiB |