scaper
Single Cell Transcriptomics-Level Cytokine Activity Prediction and Estimation
Generates cell-level cytokine activity estimates using relevant information from gene sets constructed with the 'CytoSig' and the 'Reactome' databases and scored using the modified 'Variance-adjusted Mahalanobis (VAM)' framework for single-cell RNA-sequencing (scRNA-seq) data. 'CytoSig' database is described in: Jiang at al., (2021) <doi:10.1038/s41592-021-01274-5>. 'Reactome' database is described in: Gillespie et al., (2021) <doi:10.1093/nar/gkab1028>. The 'VAM' method is outlined in: Frost (2020) <doi:10.1093/nar/gkaa582>.
Versions across snapshots
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0.2.0 |
rolling linux/jammy R-4.5 | scaper_0.2.0.tar.gz |
1.0 MiB |
0.2.0 |
rolling linux/noble R-4.5 | scaper_0.2.0.tar.gz |
1.0 MiB |
0.2.0 |
rolling source/ R- | scaper_0.2.0.tar.gz |
879.6 KiB |
0.2.0 |
latest linux/jammy R-4.5 | scaper_0.2.0.tar.gz |
1.0 MiB |
0.2.0 |
latest linux/noble R-4.5 | scaper_0.2.0.tar.gz |
1.0 MiB |
0.2.0 |
latest source/ R- | scaper_0.2.0.tar.gz |
879.6 KiB |
0.2.0 |
2026-04-26 source/ R- | scaper_0.2.0.tar.gz |
879.6 KiB |
0.2.0 |
2026-04-23 source/ R- | scaper_0.2.0.tar.gz |
879.6 KiB |
0.2.0 |
2026-04-09 windows/windows R-4.5 | scaper_0.2.0.zip |
1.0 MiB |
0.2.0 |
2025-04-20 source/ R- | scaper_0.2.0.tar.gz |
879.6 KiB |