purgeR
Inbreeding-Purging Estimation in Pedigreed Populations
Inbreeding-purging analysis of pedigreed populations, including the computation of the inbreeding coefficient, partial, ancestral and purged inbreeding coefficients, and measures of the opportunity of purging related to the individual reduction of inbreeding load. In addition, functions to calculate the effective population size and other parameters relevant to population genetics are included. See López-Cortegano E. (2021) <doi:10.1093/bioinformatics/btab599>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.8.2 |
rolling linux/jammy R-4.5 | purgeR_1.8.2.tar.gz |
604.7 KiB |
1.8.2 |
rolling linux/noble R-4.5 | purgeR_1.8.2.tar.gz |
607.1 KiB |
1.8.2 |
rolling source/ R- | purgeR_1.8.2.tar.gz |
349.9 KiB |
1.8.2 |
latest linux/jammy R-4.5 | purgeR_1.8.2.tar.gz |
604.7 KiB |
1.8.2 |
latest linux/noble R-4.5 | purgeR_1.8.2.tar.gz |
607.1 KiB |
1.8.2 |
latest source/ R- | purgeR_1.8.2.tar.gz |
349.9 KiB |
1.8.2 |
2026-04-26 source/ R- | purgeR_1.8.2.tar.gz |
349.9 KiB |
1.8.2 |
2026-04-23 source/ R- | purgeR_1.8.2.tar.gz |
349.9 KiB |
1.8.2 |
2026-04-09 windows/windows R-4.5 | purgeR_1.8.2.zip |
924.2 KiB |
1.8.2 |
2025-04-20 source/ R- | purgeR_1.8.2.tar.gz |
349.9 KiB |
Dependencies (latest)
Imports
LinkingTo
Suggests
- caret (>= 6.0-86)
- coda (>= 0.19-4)
- dplyr (>= 1.0.0)
- e1071 (>= 1.7-4)
- ggplot2 (>= 3.3.1)
- ggraph (>= 2.1.0)
- glmnet (>= 4.0-2)
- gtable (>= 0.3.0)
- igraph (>= 1.5.0.1)
- knitr (>= 1.28)
- magrittr (>= 1.5)
- pander (>= 0.6.3)
- plyr (>= 1.8.6)
- purrr (>= 0.3.4)
- rmarkdown (>= 2.2)
- scales (>= 1.1.1)
- stringr (>= 1.4.0)
- testthat (>= 2.3.2)
- tibble (>= 3.0.1)
- tidyr (>= 1.1.0)
- tidyselect (>= 1.1.0)