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pureseqtmr

Predict Transmembrane Protein Topology

Proteins reside in either the cell plasma or in the cell membrane. A membrane protein goes through the membrane at least once. Given the amino acid sequence of a membrane protein, the tool 'PureseqTM' (<https://github.com/PureseqTM/pureseqTM_package>, as described in "Efficient And Accurate Prediction Of Transmembrane Topology From Amino acid sequence only.", Wang, Qing, et al (2019), <doi:10.1101/627307>), can predict the topology of a membrane protein. This package allows one to use 'PureseqTM' from R.

Versions across snapshots

VersionRepositoryFileSize
1.4 rolling linux/jammy R-4.5 pureseqtmr_1.4.tar.gz 399.3 KiB
1.4 rolling linux/noble R-4.5 pureseqtmr_1.4.tar.gz 401.0 KiB
1.4 rolling source/ R- pureseqtmr_1.4.tar.gz 263.9 KiB
1.4 latest linux/jammy R-4.5 pureseqtmr_1.4.tar.gz 399.3 KiB
1.4 latest linux/noble R-4.5 pureseqtmr_1.4.tar.gz 401.0 KiB
1.4 latest source/ R- pureseqtmr_1.4.tar.gz 263.9 KiB
1.4 2026-04-26 source/ R- pureseqtmr_1.4.tar.gz 263.9 KiB
1.4 2026-04-23 source/ R- pureseqtmr_1.4.tar.gz 263.9 KiB
1.4 2026-04-09 windows/windows R-4.5 pureseqtmr_1.4.zip 742.4 KiB
1.4 2025-04-20 source/ R- pureseqtmr_1.4.tar.gz 263.9 KiB

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