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pQTLdata

A Collection of Proteome Panels and Metadata

It aggregates protein panel data and metadata for protein quantitative trait locus (pQTL) analysis using 'pQTLtools' (<https://jinghuazhao.github.io/pQTLtools/>). The package includes data from affinity-based panels such as 'Olink' (<https://olink.com/>) and 'SomaScan' (<https://somalogic.com/>), as well as mass spectrometry-based panels from 'CellCarta' (<https://cellcarta.com/>), 'Seer' (<https://seer.bio/>) and 'SWATH-MS' (<doi:10.15252/msb.20178126>). The metadata encompasses updated annotations and publication details.

README

# Additional data

## Auxiliary files

File/Directory   | Description
-----------------|----------------------------
EndNote/         | EndNote libraries
Olink/           | Olink/ related files
scripts/         | scripts for data generation
SomaLogic/       | SomaLogic ADAT information
README.md        | This file
REFERENCES.bib   | BibTeX bibliography

Note that most programs in scripts/ are in the form of function,
except docs.sh and cran.sh which are used to updates
GitHub/pkgdown files and build/install/check CRAN source package.

## Further information

The following websites are noted:

* <https://blood-proteoform-atlas.org/>
* <https://www.helmholtz-munich.de/>
* <https://dash.gallery/dash-drug-discovery/>

Versions across snapshots

VersionRepositoryFileSize
0.6 rolling linux/jammy R-4.5 pQTLdata_0.6.tar.gz 2.4 MiB
0.6 rolling linux/noble R-4.5 pQTLdata_0.6.tar.gz 2.4 MiB
0.6 rolling source/ R- pQTLdata_0.6.tar.gz 2.4 MiB
0.6 latest linux/jammy R-4.5 pQTLdata_0.6.tar.gz 2.4 MiB
0.6 latest linux/noble R-4.5 pQTLdata_0.6.tar.gz 2.4 MiB
0.6 latest source/ R- pQTLdata_0.6.tar.gz 2.4 MiB
0.6 2026-04-26 source/ R- pQTLdata_0.6.tar.gz 2.4 MiB
0.6 2026-04-23 source/ R- pQTLdata_0.6.tar.gz 2.4 MiB
0.6 2026-04-09 windows/windows R-4.5 pQTLdata_0.6.zip 2.4 MiB
0.5 2025-04-20 source/ R- pQTLdata_0.5.tar.gz 2.3 MiB

Dependencies (latest)

Imports

Suggests