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mclink

Metabolic Pathway Completeness and Abundance Calculation

Provides tools for analyzing metabolic pathway completeness, abundance, and transcripts using KEGG Orthology (KO) data from (meta)genomic and (meta)transcriptomic studies. Supports both completeness (presence/absence) and abundance-weighted analyses. Includes built-in KEGG reference datasets. For more details see Li et al. (2023) <doi:10.1038/s41467-023-42193-7>.

Versions across snapshots

VersionRepositoryFileSize
1.1.1 rolling linux/jammy R-4.5 mclink_1.1.1.tar.gz 254.4 KiB
1.1.1 rolling linux/noble R-4.5 mclink_1.1.1.tar.gz 254.5 KiB
1.1.1 rolling source/ R- mclink_1.1.1.tar.gz 180.8 KiB
1.1.1 latest linux/jammy R-4.5 mclink_1.1.1.tar.gz 254.4 KiB
1.1.1 latest linux/noble R-4.5 mclink_1.1.1.tar.gz 254.5 KiB
1.1.1 latest source/ R- mclink_1.1.1.tar.gz 180.8 KiB
1.1.1 2026-04-26 source/ R- mclink_1.1.1.tar.gz 180.8 KiB
1.1.1 2026-04-23 source/ R- mclink_1.1.1.tar.gz 180.8 KiB
1.1.1 2026-04-09 windows/windows R-4.5 mclink_1.1.1.zip 257.0 KiB

Dependencies (latest)

Imports