malan
MAle Lineage ANalysis
MAle Lineage ANalysis by simulating genealogies backwards and imposing short tandem repeats (STR) mutations forwards. Intended for forensic Y chromosomal STR (Y-STR) haplotype analyses. Numerous analyses are possible, e.g. number of matches and meiotic distance to matches. Refer to papers mentioned in citation("malan") (DOI's: <doi:10.1371/journal.pgen.1007028>, <doi:10.21105/joss.00684> and <doi:10.1016/j.fsigen.2018.10.004>).
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.0.4 |
rolling linux/jammy R-4.5 | malan_1.0.4.tar.gz |
1.1 MiB |
1.0.4 |
rolling linux/noble R-4.5 | malan_1.0.4.tar.gz |
1.1 MiB |
1.0.4 |
rolling source/ R- | malan_1.0.4.tar.gz |
762.6 KiB |
1.0.4 |
latest linux/jammy R-4.5 | malan_1.0.4.tar.gz |
1.1 MiB |
1.0.4 |
latest linux/noble R-4.5 | malan_1.0.4.tar.gz |
1.1 MiB |
1.0.4 |
latest source/ R- | malan_1.0.4.tar.gz |
762.6 KiB |
1.0.4 |
2026-04-26 source/ R- | malan_1.0.4.tar.gz |
762.6 KiB |
1.0.4 |
2026-04-23 source/ R- | malan_1.0.4.tar.gz |
762.6 KiB |
1.0.4 |
2026-04-09 windows/windows R-4.5 | malan_1.0.4.zip |
1.4 MiB |
1.0.3 |
2025-04-20 source/ R- | malan_1.0.3.tar.gz |
552.8 KiB |
Dependencies (latest)
Depends
Imports
- Rcpp (>= 0.12.7)
- RcppProgress (>= 0.2.1)
- RcppArmadillo (>= 0.9.880.1.0)
- igraph (>= 1.0.1)
- tibble (>= 1.1)
- magrittr (>= 1.5)
- methods