macrosyntR
Draw Ordered Oxford Grids and Chord Diagrams
Use standard genomics file format (BED) and a table of orthologs to illustrate synteny conservation at the genome-wide scale. Significantly conserved linkage groups are identified as described in Simakov et al. (2020) <doi:10.1038/s41559-020-1156-z> and displayed on an Oxford Grid (Edwards (1991) <doi:10.1111/j.1469-1809.1991.tb00394.x>) or a chord diagram as in Simakov et al. (2022) <doi:10.1126/sciadv.abi5884>. The package provides a function that uses a network-based greedy algorithm to find communities (Clauset et al. (2004) <doi:10.1103/PhysRevE.70.066111>) and so automatically order the chromosomes on the plot to improve interpretability.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.3.3 |
rolling linux/jammy R-4.5 | macrosyntR_0.3.3.tar.gz |
2.3 MiB |
0.3.3 |
rolling linux/noble R-4.5 | macrosyntR_0.3.3.tar.gz |
2.3 MiB |
0.3.3 |
rolling source/ R- | macrosyntR_0.3.3.tar.gz |
2.2 MiB |
0.3.3 |
latest linux/jammy R-4.5 | macrosyntR_0.3.3.tar.gz |
2.3 MiB |
0.3.3 |
latest linux/noble R-4.5 | macrosyntR_0.3.3.tar.gz |
2.3 MiB |
0.3.3 |
latest source/ R- | macrosyntR_0.3.3.tar.gz |
2.2 MiB |
0.3.3 |
2026-04-26 source/ R- | macrosyntR_0.3.3.tar.gz |
2.2 MiB |
0.3.3 |
2026-04-23 source/ R- | macrosyntR_0.3.3.tar.gz |
2.2 MiB |
0.3.3 |
2026-04-09 windows/windows R-4.5 | macrosyntR_0.3.3.zip |
2.3 MiB |
0.3.3 |
2025-04-20 source/ R- | macrosyntR_0.3.3.tar.gz |
2.2 MiB |