grandR
Comprehensive Analysis of Nucleotide Conversion Sequencing Data
Nucleotide conversion sequencing experiments have been developed to add a temporal dimension to RNA-seq and single-cell RNA-seq. Such experiments require specialized tools for primary processing such as GRAND-SLAM, (see 'Jürges et al' <doi:10.1093/bioinformatics/bty256>) and specialized tools for downstream analyses. 'grandR' provides a comprehensive toolbox for quality control, kinetic modeling, differential gene expression analysis and visualization of such data. Fast Wilcoxon tests are supported via the 'presto' package (available at <https://github.com/immunogenomics/presto>).
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.2.7 |
rolling source/ R- | grandR_0.2.7.tar.gz |
645.8 KiB |
0.2.7 |
rolling linux/jammy R-4.5 | grandR_0.2.7.tar.gz |
1.4 MiB |
0.2.7 |
rolling linux/noble R-4.5 | grandR_0.2.7.tar.gz |
1.4 MiB |
0.2.7 |
latest source/ R- | grandR_0.2.7.tar.gz |
645.8 KiB |
0.2.7 |
latest linux/jammy R-4.5 | grandR_0.2.7.tar.gz |
1.4 MiB |
0.2.7 |
latest linux/noble R-4.5 | grandR_0.2.7.tar.gz |
1.4 MiB |
0.2.7 |
2026-04-23 source/ R- | grandR_0.2.7.tar.gz |
645.8 KiB |
0.2.7 |
2026-04-09 windows/windows R-4.5 | grandR_0.2.7.zip |
1.4 MiB |
0.2.6 |
2025-04-20 source/ R- | grandR_0.2.6.tar.gz |
632.8 KiB |