deepSTRAPP
Test for Differences in Diversification Rates over Time
Employ time-calibrated phylogenies and trait/range data to test for differences in diversification rates over evolutionary time. Extend the STRAPP test from BAMMtools::traitDependentBAMM() to any time step along phylogenies. See inst/COPYRIGHTS for details on third-party code.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.0.0 |
rolling linux/jammy R-4.5 | deepSTRAPP_1.0.0.tar.gz |
5.2 MiB |
1.0.0 |
rolling linux/noble R-4.5 | deepSTRAPP_1.0.0.tar.gz |
7.5 MiB |
1.0.0 |
rolling source/ R- | deepSTRAPP_1.0.0.tar.gz |
7.5 MiB |
1.0.0 |
latest linux/jammy R-4.5 | deepSTRAPP_1.0.0.tar.gz |
5.2 MiB |
1.0.0 |
latest linux/noble R-4.5 | deepSTRAPP_1.0.0.tar.gz |
7.5 MiB |
1.0.0 |
latest source/ R- | deepSTRAPP_1.0.0.tar.gz |
7.5 MiB |
1.0.0 |
2026-04-26 source/ R- | deepSTRAPP_1.0.0.tar.gz |
7.5 MiB |
1.0.0 |
2026-04-23 source/ R- | deepSTRAPP_1.0.0.tar.gz |
7.5 MiB |
1.0.0 |
2026-04-09 windows/windows R-4.5 | deepSTRAPP_1.0.0.zip |
5.3 MiB |
Dependencies (latest)
Imports
- ape (>= 5.8.0)
- BAMMtools (>= 2.1.12)
- cladoRcpp (>= 0.15.1)
- coda (>= 0.19-4.1)
- cowplot (>= 1.1.3)
- dplyr (>= 1.1.4)
- dunn.test (>= 1.3.6)
- geiger (>= 2.0.11)
- ggplot2 (>= 3.5.0)
- methods (>= 4.4.2)
- phytools (>= 2.0.0)
- plyr (>= 1.8.9)
- purrr (>= 1.0.2)
- qpdf (>= 1.4.1)
- RColorBrewer (>= 1.1-3)
- Rcpp (>= 1.0.14)
- scales (>= 1.3.0)
- stringr (>= 1.5.1)
- tidyr (>= 1.3.1)
LinkingTo
Suggests
- knitr
- maps (>= 3.4.2)
- parallel (>= 4.4.2)
- BioGeoBEARS (>= 1.1.3)
- rmarkdown