castgen
Estimate Sample Size for Population Genomic Studies
Estimate sample sizes needed to capture target levels of genetic diversity from a population (multivariate allele frequencies) for applications like germplasm conservation and breeding efforts. Compares bootstrap samples to a full population using linear regression, employing the R-squared value to represent the proportion of diversity captured. Iteratively increases sample size until a user-defined target R-squared is met. Offers a parallelized R implementation of a previously developed 'python' method. All ploidy levels are supported. For more details, see Sandercock et al. (2024) <doi:10.1073/pnas.2403505121>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.0.2 |
rolling linux/jammy R-4.5 | castgen_1.0.2.tar.gz |
27.5 KiB |
1.0.2 |
rolling linux/noble R-4.5 | castgen_1.0.2.tar.gz |
27.5 KiB |
1.0.2 |
rolling source/ R- | castgen_1.0.2.tar.gz |
8.0 KiB |
1.0.2 |
latest linux/jammy R-4.5 | castgen_1.0.2.tar.gz |
27.5 KiB |
1.0.2 |
latest linux/noble R-4.5 | castgen_1.0.2.tar.gz |
27.5 KiB |
1.0.2 |
latest source/ R- | castgen_1.0.2.tar.gz |
8.0 KiB |
1.0.2 |
2026-04-26 source/ R- | castgen_1.0.2.tar.gz |
8.0 KiB |
1.0.2 |
2026-04-23 source/ R- | castgen_1.0.2.tar.gz |
8.0 KiB |
1.0.2 |
2026-04-09 windows/windows R-4.5 | castgen_1.0.2.zip |
30.3 KiB |
1.0.2 |
2025-04-20 source/ R- | castgen_1.0.2.tar.gz |
8.0 KiB |