SpaCCI
Spatially Aware Cell-Cell Interaction Analysis
Provides tools for analyzing spatial cell-cell interactions based on ligand-receptor pairs, including functions for local, regional, and global analysis using spatial transcriptomics data. Integrates with databases like 'CellChat' <https://github.com/jinworks/CellChat>, 'CellPhoneDB' <https://www.cellphonedb.org/>, 'Cellinker' <https://www.rna-society.org/cellinker/>, 'ICELLNET' <https://github.com/soumelis-lab/ICELLNET>, and 'ConnectomeDB' <https://humanconnectome.org/software/connectomedb/> to identify ligand-receptor pairs, visualize interactions through heatmaps, chord diagrams, and infer interactions on different spatial scales.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.0.5 |
rolling linux/jammy R-4.5 | SpaCCI_1.0.5.tar.gz |
4.9 MiB |
1.0.5 |
rolling linux/noble R-4.5 | SpaCCI_1.0.5.tar.gz |
4.9 MiB |
1.0.5 |
rolling source/ R- | SpaCCI_1.0.5.tar.gz |
4.7 MiB |
1.0.5 |
latest linux/jammy R-4.5 | SpaCCI_1.0.5.tar.gz |
4.9 MiB |
1.0.5 |
latest linux/noble R-4.5 | SpaCCI_1.0.5.tar.gz |
4.9 MiB |
1.0.5 |
latest source/ R- | SpaCCI_1.0.5.tar.gz |
4.7 MiB |
1.0.5 |
2026-04-26 source/ R- | SpaCCI_1.0.5.tar.gz |
4.7 MiB |
1.0.5 |
2026-04-23 source/ R- | SpaCCI_1.0.5.tar.gz |
4.7 MiB |
1.0.5 |
2026-04-09 windows/windows R-4.5 | SpaCCI_1.0.5.zip |
5.2 MiB |
1.0.3 |
2025-04-20 source/ R- | SpaCCI_1.0.3.tar.gz |
4.7 MiB |