SlideCNA
Calls Copy Number Alterations from Slide-Seq Data
This takes spatial single-cell-type RNA-seq data (specifically designed for Slide-seq v2) that calls copy number alterations (CNAs) using pseudo-spatial binning, clusters cellular units (e.g. beads) based on CNA profile, and visualizes spatial CNA patterns. Documentation about 'SlideCNA' is included in the the pre-print by Zhang et al. (2022, <doi:10.1101/2022.11.25.517982>). The package 'enrichR' (>= 3.0), conditionally used to annotate SlideCNA-determined clusters with gene ontology terms, can be installed at <https://github.com/wjawaid/enrichR> or with install_github("wjawaid/enrichR").
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.1.0 |
rolling linux/jammy R-4.5 | SlideCNA_0.1.0.tar.gz |
140.8 KiB |
0.1.0 |
rolling linux/noble R-4.5 | SlideCNA_0.1.0.tar.gz |
140.9 KiB |
0.1.0 |
rolling source/ R- | SlideCNA_0.1.0.tar.gz |
39.0 KiB |
0.1.0 |
latest linux/jammy R-4.5 | SlideCNA_0.1.0.tar.gz |
140.8 KiB |
0.1.0 |
latest linux/noble R-4.5 | SlideCNA_0.1.0.tar.gz |
140.9 KiB |
0.1.0 |
latest source/ R- | SlideCNA_0.1.0.tar.gz |
39.0 KiB |
0.1.0 |
2026-04-26 source/ R- | SlideCNA_0.1.0.tar.gz |
39.0 KiB |
0.1.0 |
2026-04-23 source/ R- | SlideCNA_0.1.0.tar.gz |
39.0 KiB |
0.1.0 |
2026-04-09 windows/windows R-4.5 | SlideCNA_0.1.0.zip |
143.5 KiB |
0.1.0 |
2025-04-20 source/ R- | SlideCNA_0.1.0.tar.gz |
39.0 KiB |