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QuICSeedR

Analyze Data for Fluorophore-Assisted Seed Amplification Assays

A toolkit for analysis and visualization of data from fluorophore-assisted seed amplification assays, such as Real-Time Quaking-Induced Conversion (RT-QuIC) and Fluorophore-Assisted Protein Misfolding Cyclic Amplification (PMCA). 'QuICSeedR' addresses limitations in existing software by automating data processing, supporting large-scale analysis, and enabling comparative studies of analysis methods. It incorporates methods described in Henderson et al. (2015) <doi:10.1099/vir.0.069906-0>, Li et al. (2020) <doi:10.1038/s41598-021-96127-8>, Rowden et al. (2023) <doi:10.3390/pathogens12020309>, Haley et al. (2013) <doi:10.1371/journal.pone.0081488>, and Mair and Wilcox (2020) <doi:10.3758/s13428-019-01246-w>. Please refer to the original publications for details.

Versions across snapshots

VersionRepositoryFileSize
0.1.2 rolling linux/jammy R-4.5 QuICSeedR_0.1.2.tar.gz 503.6 KiB
0.1.2 rolling linux/noble R-4.5 QuICSeedR_0.1.2.tar.gz 503.4 KiB
0.1.2 rolling source/ R- QuICSeedR_0.1.2.tar.gz 434.9 KiB
0.1.2 latest linux/jammy R-4.5 QuICSeedR_0.1.2.tar.gz 503.6 KiB
0.1.2 latest linux/noble R-4.5 QuICSeedR_0.1.2.tar.gz 503.4 KiB
0.1.2 latest source/ R- QuICSeedR_0.1.2.tar.gz 434.9 KiB
0.1.2 2026-04-26 source/ R- QuICSeedR_0.1.2.tar.gz 434.9 KiB
0.1.2 2026-04-23 source/ R- QuICSeedR_0.1.2.tar.gz 434.9 KiB
0.1.2 2026-04-09 windows/windows R-4.5 QuICSeedR_0.1.2.zip 516.9 KiB
0.1.2 2025-04-20 source/ R- QuICSeedR_0.1.2.tar.gz 434.9 KiB

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