Qploidy
Estimation of Ploidy and Detection of Aneuploidy Using Genotyping Data
Provides functions for estimating ploidy levels and detecting aneuploidy in individuals using allele intensities or allele count data from high-throughput genotyping platforms, including single nucleotide polymorphism (SNP) arrays and sequencing-based technologies. Implements an extended version of the 'PennCNV' signal standardization method by Wang et al. (2007) <doi:10.1101/gr.6861907> for higher ploidy levels. Computes B-allele frequencies (BAF), z-scores, and identifies copy number variation patterns.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.0.1 |
rolling linux/jammy R-4.5 | Qploidy_1.0.1.tar.gz |
3.1 MiB |
1.0.1 |
rolling linux/noble R-4.5 | Qploidy_1.0.1.tar.gz |
3.1 MiB |
1.0.1 |
rolling source/ R- | Qploidy_1.0.1.tar.gz |
3.1 MiB |
1.0.1 |
latest linux/jammy R-4.5 | Qploidy_1.0.1.tar.gz |
3.1 MiB |
1.0.1 |
latest linux/noble R-4.5 | Qploidy_1.0.1.tar.gz |
3.1 MiB |
1.0.1 |
latest source/ R- | Qploidy_1.0.1.tar.gz |
3.1 MiB |
1.0.1 |
2026-04-26 source/ R- | Qploidy_1.0.1.tar.gz |
3.1 MiB |
1.0.1 |
2026-04-23 source/ R- | Qploidy_1.0.1.tar.gz |
3.1 MiB |