HaploVar
Defining Local Haplotype Variants for Use in Trait Association and Trait Prediction Analyses
A local haplotyping tool for use in trait association and trait prediction analyses pipelines. 'HaploVar' enables users take single nucleotide polymorphisms (SNPs) (in VCF format) and a linkage disequilibrium (LD) matrix, calculate local haplotypes and format the output to be compatible with a wide range of trait association and trait prediction tools. The local haplotypes are calculated from the LD matrix using a clustering algorithm called density-based spatial clustering of applications with noise ('DBSCAN') (Ester et al., 1996) <ISBN: 1577350049>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.1.1 |
rolling source/ R- | HaploVar_0.1.1.tar.gz |
1.1 MiB |
0.1.1 |
rolling linux/jammy R-4.5 | HaploVar_0.1.1.tar.gz |
915.9 KiB |
0.1.1 |
rolling linux/noble R-4.5 | HaploVar_0.1.1.tar.gz |
915.8 KiB |
0.1.1 |
latest source/ R- | HaploVar_0.1.1.tar.gz |
1.1 MiB |
0.1.1 |
latest linux/jammy R-4.5 | HaploVar_0.1.1.tar.gz |
915.9 KiB |
0.1.1 |
latest linux/noble R-4.5 | HaploVar_0.1.1.tar.gz |
915.8 KiB |
0.1.1 |
2026-04-23 source/ R- | HaploVar_0.1.1.tar.gz |
1.1 MiB |
0.1.1 |
2026-04-09 windows/windows R-4.5 | HaploVar_0.1.1.zip |
921.4 KiB |