HDXBoxeR
Analysis of Hydrogen-Deuterium Exchange Mass-Spectrometry Data
A protocol that facilitates the processing and analysis of Hydrogen-Deuterium Exchange Mass Spectrometry data using p-value statistics and Critical Interval analysis. It provides a pipeline for analyzing data from 'HDXExaminer' (Sierra Analytics, Trajan Scientific), automating matching and comparison of protein states through Welch's T-test and the Critical Interval statistical framework. Additionally, it simplifies data export, generates 'PyMol' scripts, and ensures calculations meet publication standards. 'HDXBoxeR' assists in various aspects of hydrogen-deuterium exchange data analysis, including reprocessing data, calculating parameters, identifying significant peptides, generating plots, and facilitating comparison between protein states. For details check papers by Hageman and Weis (2019) <doi:10.1021/acs.analchem.9b01325> and Masson et al. (2019) <doi:10.1038/s41592-019-0459-y>. 'HDXBoxeR' citation: Janowska et al. (2024) <doi:10.1093/bioinformatics/btae479>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.0.2 |
rolling source/ R- | HDXBoxeR_0.0.2.tar.gz |
998.2 KiB |
0.0.2 |
rolling linux/jammy R-4.5 | HDXBoxeR_0.0.2.tar.gz |
1.2 MiB |
0.0.2 |
rolling linux/noble R-4.5 | HDXBoxeR_0.0.2.tar.gz |
1.2 MiB |
0.0.2 |
latest source/ R- | HDXBoxeR_0.0.2.tar.gz |
998.2 KiB |
0.0.2 |
latest linux/jammy R-4.5 | HDXBoxeR_0.0.2.tar.gz |
1.2 MiB |
0.0.2 |
latest linux/noble R-4.5 | HDXBoxeR_0.0.2.tar.gz |
1.2 MiB |
0.0.2 |
2026-04-23 source/ R- | HDXBoxeR_0.0.2.tar.gz |
998.2 KiB |
0.0.2 |
2026-04-09 windows/windows R-4.5 | HDXBoxeR_0.0.2.zip |
1.2 MiB |
0.0.2 |
2025-04-20 source/ R- | HDXBoxeR_0.0.2.tar.gz |
998.2 KiB |