DESNP
Differentially Expressed Single Nucleotide Polymorphism
Provides a framework for the identification and analysis of Differentially Expressed Single Nucleotide Polymorphisms (deSNPs) using high-throughput sequencing data. It enables users to import SNP count data from variant files, perform allele-specific read count extraction, and statistically detect SNPs showing significant differences in allele expression between biological conditions or sample groups. This package contains tools for calculating SNP-index and Delta SNP-index from VCF-derived allele depth data with statistical testing and filtering, including sliding-window analysis of genomic regions.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.1.0 |
rolling linux/jammy R-4.5 | DESNP_0.1.0.tar.gz |
40.3 KiB |
0.1.0 |
rolling linux/noble R-4.5 | DESNP_0.1.0.tar.gz |
40.3 KiB |
0.1.0 |
rolling source/ R- | DESNP_0.1.0.tar.gz |
40.3 KiB |
0.1.0 |
latest linux/jammy R-4.5 | DESNP_0.1.0.tar.gz |
40.3 KiB |
0.1.0 |
latest linux/noble R-4.5 | DESNP_0.1.0.tar.gz |
40.3 KiB |
0.1.0 |
latest source/ R- | DESNP_0.1.0.tar.gz |
40.3 KiB |
0.1.0 |
2026-04-26 source/ R- | DESNP_0.1.0.tar.gz |
40.3 KiB |
0.1.0 |
2026-04-23 source/ R- | DESNP_0.1.0.tar.gz |
40.3 KiB |