tripsAndDipR
Identification of 2n and 3n Samples from Amplicon Sequencing Data
Uses read counts for biallelic single nucleotide polymorphisms (SNPs) to compare the likelihoods for the observed read counts given that a sample is either diploid or triploid. It allows parameters to be specified to account for sequencing error rates and allelic bias. For details of the algorithm, please see Delomas (2019) <doi:10.1111/1755-0998.13073>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.1.0 |
rolling linux/jammy R-4.5 | tripsAndDipR_0.1.0.tar.gz |
15.3 KiB |
0.1.0 |
rolling linux/noble R-4.5 | tripsAndDipR_0.1.0.tar.gz |
15.2 KiB |
0.1.0 |
rolling source/ R- | tripsAndDipR_0.1.0.tar.gz |
3.9 KiB |
0.1.0 |
latest linux/jammy R-4.5 | tripsAndDipR_0.1.0.tar.gz |
15.3 KiB |
0.1.0 |
latest linux/noble R-4.5 | tripsAndDipR_0.1.0.tar.gz |
15.2 KiB |
0.1.0 |
latest source/ R- | tripsAndDipR_0.1.0.tar.gz |
3.9 KiB |
0.1.0 |
2026-04-26 source/ R- | tripsAndDipR_0.1.0.tar.gz |
3.9 KiB |
0.1.0 |
2026-04-23 source/ R- | tripsAndDipR_0.1.0.tar.gz |
3.9 KiB |
0.1.0 |
2026-04-09 windows/windows R-4.5 | tripsAndDipR_0.1.0.zip |
18.5 KiB |
0.1.0 |
2025-04-20 source/ R- | tripsAndDipR_0.1.0.tar.gz |
3.9 KiB |