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The tRNA Adaptation Index

Functions and example files to calculate the tRNA adaptation index, a measure of the level of co-adaptation between the set of tRNA genes and the codon usage bias of protein-coding genes in a given genome. The methodology is described in dos Reis, Wernisch and Savva (2003) <doi:10.1093/nar/gkg897>, and dos Reis, Savva and Wernisch (2004) <doi:10.1093/nar/gkh834>.

Versions across snapshots

VersionRepositoryFileSize
0.2.2 rolling linux/jammy R-4.5 tAI_0.2.2.tar.gz 56.7 KiB
0.2.2 rolling linux/noble R-4.5 tAI_0.2.2.tar.gz 56.5 KiB
0.2.2 rolling source/ R- tAI_0.2.2.tar.gz 39.4 KiB
0.2.2 latest linux/jammy R-4.5 tAI_0.2.2.tar.gz 56.7 KiB
0.2.2 latest linux/noble R-4.5 tAI_0.2.2.tar.gz 56.5 KiB
0.2.2 latest source/ R- tAI_0.2.2.tar.gz 39.4 KiB
0.2.2 2026-04-26 source/ R- tAI_0.2.2.tar.gz 39.4 KiB
0.2.2 2026-04-23 source/ R- tAI_0.2.2.tar.gz 39.4 KiB
0.2.2 2026-04-09 windows/windows R-4.5 tAI_0.2.2.zip 57.5 KiB
0.2.2 2025-04-20 source/ R- tAI_0.2.2.tar.gz 39.4 KiB