snpsettest
A Set-Based Association Test using GWAS Summary Statistics
The goal of 'snpsettest' is to provide simple tools that perform set-based association tests (e.g., gene-based association tests) using GWAS (genome-wide association study) summary statistics. A set-based association test in this package is based on the statistical model described in VEGAS (versatile gene-based association study), which combines the effects of a set of SNPs accounting for linkage disequilibrium between markers. This package uses a different approach from the original VEGAS implementation to compute set-level p values more efficiently, as described in <https://github.com/HimesGroup/snpsettest/wiki/Statistical-test-in-snpsettest>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.1.2 |
rolling linux/jammy R-4.5 | snpsettest_0.1.2.tar.gz |
969.6 KiB |
0.1.2 |
rolling linux/noble R-4.5 | snpsettest_0.1.2.tar.gz |
970.9 KiB |
0.1.2 |
rolling source/ R- | snpsettest_0.1.2.tar.gz |
817.3 KiB |
0.1.2 |
latest linux/jammy R-4.5 | snpsettest_0.1.2.tar.gz |
969.6 KiB |
0.1.2 |
latest linux/noble R-4.5 | snpsettest_0.1.2.tar.gz |
970.9 KiB |
0.1.2 |
latest source/ R- | snpsettest_0.1.2.tar.gz |
817.3 KiB |
0.1.2 |
2026-04-26 source/ R- | snpsettest_0.1.2.tar.gz |
817.3 KiB |
0.1.2 |
2026-04-23 source/ R- | snpsettest_0.1.2.tar.gz |
817.3 KiB |
0.1.2 |
2026-04-09 windows/windows R-4.5 | snpsettest_0.1.2.zip |
1.3 MiB |
0.1.2 |
2025-04-20 source/ R- | snpsettest_0.1.2.tar.gz |
817.3 KiB |