rsahmi
Single-Cell Analysis of Host-Microbiome Interactions
A computational resource designed to accurately detect microbial nucleic acids while filtering out contaminants and false-positive taxonomic assignments from standard transcriptomic sequencing of mammalian tissues. For more details, see Ghaddar (2023) <doi:10.1038/s43588-023-00507-1>. This implementation leverages the 'polars' package for fast and systematic microbial signal recovery and denoising from host tissue genomic sequencing.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.0.2 |
rolling linux/jammy R-4.5 | rsahmi_0.0.2.tar.gz |
4.4 MiB |
0.0.2 |
rolling linux/noble R-4.5 | rsahmi_0.0.2.tar.gz |
4.4 MiB |
0.0.2 |
rolling source/ R- | rsahmi_0.0.2.tar.gz |
4.4 MiB |
0.0.2 |
latest linux/jammy R-4.5 | rsahmi_0.0.2.tar.gz |
4.4 MiB |
0.0.2 |
latest linux/noble R-4.5 | rsahmi_0.0.2.tar.gz |
4.4 MiB |
0.0.2 |
latest source/ R- | rsahmi_0.0.2.tar.gz |
4.4 MiB |
0.0.2 |
2026-04-26 source/ R- | rsahmi_0.0.2.tar.gz |
4.4 MiB |
0.0.2 |
2026-04-23 source/ R- | rsahmi_0.0.2.tar.gz |
4.4 MiB |
0.0.2 |
2025-04-20 source/ R- | rsahmi_0.0.2.tar.gz |
4.4 MiB |