rhierbaps
Clustering Genetic Sequence Data Using the HierBAPS Algorithm
Implements the hierarchical Bayesian analysis of populations structure (hierBAPS) algorithm of Cheng et al. (2013) <doi:10.1093/molbev/mst028> for clustering DNA sequences from multiple sequence alignments in FASTA format. The implementation includes improved defaults and plotting capabilities and unlike the original 'MATLAB' version removes singleton SNPs by default.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.1.4 |
rolling linux/jammy R-4.5 | rhierbaps_1.1.4.tar.gz |
1.6 MiB |
1.1.4 |
rolling linux/noble R-4.5 | rhierbaps_1.1.4.tar.gz |
1.6 MiB |
1.1.4 |
rolling source/ R- | rhierbaps_1.1.4.tar.gz |
1.5 MiB |
1.1.4 |
latest linux/jammy R-4.5 | rhierbaps_1.1.4.tar.gz |
1.6 MiB |
1.1.4 |
latest linux/noble R-4.5 | rhierbaps_1.1.4.tar.gz |
1.6 MiB |
1.1.4 |
latest source/ R- | rhierbaps_1.1.4.tar.gz |
1.5 MiB |
1.1.4 |
2026-04-26 source/ R- | rhierbaps_1.1.4.tar.gz |
1.5 MiB |
1.1.4 |
2026-04-23 source/ R- | rhierbaps_1.1.4.tar.gz |
1.5 MiB |
1.1.4 |
2026-04-09 windows/windows R-4.5 | rhierbaps_1.1.4.zip |
1.6 MiB |
1.1.4 |
2025-04-20 source/ R- | rhierbaps_1.1.4.tar.gz |
1.5 MiB |