preseqR
Predicting Species Accumulation Curves
Originally as an R version of Preseq <doi:10.1038/nmeth.2375>, the package has extended its functionality to predict the r-species accumulation curve (r-SAC), which is the number of species represented at least r times as a function of the sampling effort. When r = 1, the curve is known as the species accumulation curve, or the library complexity curve in high-throughput genomic sequencing. The package includes both parametric and nonparametric methods, as described by Deng C, et al. (2018) <arXiv:1607.02804v3>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
4.0.0 |
rolling linux/jammy R-4.5 | preseqR_4.0.0.tar.gz |
223.4 KiB |
4.0.0 |
rolling linux/noble R-4.5 | preseqR_4.0.0.tar.gz |
223.1 KiB |
4.0.0 |
rolling source/ R- | preseqR_4.0.0.tar.gz |
83.2 KiB |
4.0.0 |
latest linux/jammy R-4.5 | preseqR_4.0.0.tar.gz |
223.4 KiB |
4.0.0 |
latest linux/noble R-4.5 | preseqR_4.0.0.tar.gz |
223.1 KiB |
4.0.0 |
latest source/ R- | preseqR_4.0.0.tar.gz |
83.2 KiB |
4.0.0 |
2026-04-26 source/ R- | preseqR_4.0.0.tar.gz |
83.2 KiB |
4.0.0 |
2026-04-23 source/ R- | preseqR_4.0.0.tar.gz |
83.2 KiB |
4.0.0 |
2026-04-09 windows/windows R-4.5 | preseqR_4.0.0.zip |
228.8 KiB |
4.0.0 |
2025-04-20 source/ R- | preseqR_4.0.0.tar.gz |
83.2 KiB |