Crandore Hub

plinkFile

'PLINK' (and 'GCTA') File Helpers

Reads/write binary genotype file compatible with 'PLINK' <https://www.cog-genomics.org/plink/1.9/input#bed> into/from a R matrix; traverse genotype data one windows of variants at a time, like apply() or a for loop; reads/writes genotype relatedness/kinship matrices created by 'PLINK' <https://www.cog-genomics.org/plink/1.9/distance#make_rel> or 'GCTA' <https://cnsgenomics.com/software/gcta/#MakingaGRM> into/from a R square matrix. It is best used for bringing data produced by 'PLINK' and 'GCTA' into R workflow.

Versions across snapshots

VersionRepositoryFileSize
0.2.1 rolling linux/jammy R-4.5 plinkFile_0.2.1.tar.gz 668.9 KiB
0.2.1 rolling linux/noble R-4.5 plinkFile_0.2.1.tar.gz 669.0 KiB
0.2.1 rolling source/ R- plinkFile_0.2.1.tar.gz 594.3 KiB
0.2.1 latest linux/jammy R-4.5 plinkFile_0.2.1.tar.gz 668.9 KiB
0.2.1 latest linux/noble R-4.5 plinkFile_0.2.1.tar.gz 669.0 KiB
0.2.1 latest source/ R- plinkFile_0.2.1.tar.gz 594.3 KiB
0.2.1 2026-04-26 source/ R- plinkFile_0.2.1.tar.gz 594.3 KiB
0.2.1 2026-04-23 source/ R- plinkFile_0.2.1.tar.gz 594.3 KiB
0.2.1 2026-04-09 windows/windows R-4.5 plinkFile_0.2.1.zip 669.4 KiB
0.2.1 2025-04-20 source/ R- plinkFile_0.2.1.tar.gz 594.3 KiB