occumb
Site Occupancy Modeling for Environmental DNA Metabarcoding
Fits community site occupancy models to environmental DNA metabarcoding data collected using spatially-replicated survey design. Model fitting results can be used to evaluate and compare the effectiveness of species detection to find an efficient survey design. Reference: Fukaya et al. (2022) <doi:10.1111/2041-210X.13732>, Fukaya and Hasebe (2025) <doi:10.1002/1438-390X.12219>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.3.0 |
rolling linux/jammy R-4.5 | occumb_1.3.0.tar.gz |
804.8 KiB |
1.3.0 |
rolling linux/noble R-4.5 | occumb_1.3.0.tar.gz |
804.4 KiB |
1.3.0 |
rolling source/ R- | occumb_1.3.0.tar.gz |
872.7 KiB |
1.3.0 |
latest linux/jammy R-4.5 | occumb_1.3.0.tar.gz |
804.8 KiB |
1.3.0 |
latest linux/noble R-4.5 | occumb_1.3.0.tar.gz |
804.4 KiB |
1.3.0 |
latest source/ R- | occumb_1.3.0.tar.gz |
872.7 KiB |
1.3.0 |
2026-04-26 source/ R- | occumb_1.3.0.tar.gz |
872.7 KiB |
1.3.0 |
2026-04-23 source/ R- | occumb_1.3.0.tar.gz |
872.7 KiB |
1.3.0 |
2026-04-09 windows/windows R-4.5 | occumb_1.3.0.zip |
810.2 KiB |
1.1.0 |
2025-04-20 source/ R- | occumb_1.1.0.tar.gz |
756.8 KiB |