modelSSE
Modelling Infectious Disease Superspreading from Contact Tracing Data
Comprehensive analytical tools are provided to characterize infectious disease superspreading from contact tracing surveillance data. The underlying theoretical frameworks of this toolkit include branching process with transmission heterogeneity (Lloyd-Smith et al. (2005) <doi:10.1038/nature04153>), case cluster size distribution (Nishiura et al. (2012) <doi:10.1016/j.jtbi.2011.10.039>, Blumberg et al. (2014) <doi:10.1371/journal.ppat.1004452>, and Kucharski and Althaus (2015) <doi:10.2807/1560-7917.ES2015.20.25.21167>), and decomposition of reproduction number (Zhao et al. (2022) <doi:10.1371/journal.pcbi.1010281>).
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.1-3 |
rolling linux/jammy R-4.5 | modelSSE_0.1-3.tar.gz |
129.3 KiB |
0.1-3 |
rolling linux/noble R-4.5 | modelSSE_0.1-3.tar.gz |
129.3 KiB |
0.1-3 |
rolling source/ R- | modelSSE_0.1-3.tar.gz |
28.8 KiB |
0.1-3 |
latest linux/jammy R-4.5 | modelSSE_0.1-3.tar.gz |
129.3 KiB |
0.1-3 |
latest linux/noble R-4.5 | modelSSE_0.1-3.tar.gz |
129.3 KiB |
0.1-3 |
latest source/ R- | modelSSE_0.1-3.tar.gz |
28.8 KiB |
0.1-3 |
2026-04-26 source/ R- | modelSSE_0.1-3.tar.gz |
28.8 KiB |
0.1-3 |
2026-04-23 source/ R- | modelSSE_0.1-3.tar.gz |
28.8 KiB |
0.1-3 |
2026-04-09 windows/windows R-4.5 | modelSSE_0.1-3.zip |
132.5 KiB |
0.1-3 |
2025-04-20 source/ R- | modelSSE_0.1-3.tar.gz |
28.8 KiB |