mechgraph
Mechanism Evidence Graph Data Model
Provides a lightweight graph data model for representing, combining, querying, and summarizing evidence-backed biological mechanism graphs. A mechgraph is an S3 list holding a node table, an edge table, and provenance metadata. The package implements builders that convert STRING and BioGRID interaction tables into mechgraph objects, combiners (mg_bind(), mg_combine()) that merge graphs while preserving duplicate evidence records, accessors (mg_nodes(), mg_edges(), mg_metadata()) and mutators (mg_add_*(), mg_drop_*()) for node and edge tables, filters by type, source, identifier, and score, induced-subgraph construction, structural validation (mg_validate()), and quality-control summaries (mg_qc()). Szklarczyk et al. (2023) <doi:10.1093/nar/gkac1000> Oughtred et al. (2021) <doi:10.1002/pro.3938>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.0.1 |
rolling linux/jammy R-4.5 | mechgraph_0.0.1.tar.gz |
96.4 KiB |
0.0.1 |
rolling linux/noble R-4.5 | mechgraph_0.0.1.tar.gz |
96.1 KiB |
0.0.1 |
rolling source/ R- | mechgraph_0.0.1.tar.gz |
20.7 KiB |
0.0.1 |
latest linux/jammy R-4.5 | mechgraph_0.0.1.tar.gz |
96.4 KiB |
0.0.1 |
latest linux/noble R-4.5 | mechgraph_0.0.1.tar.gz |
96.1 KiB |
0.0.1 |
latest source/ R- | mechgraph_0.0.1.tar.gz |
20.7 KiB |
0.0.1 |
2026-04-23 source/ R- | mechgraph_0.0.1.tar.gz |
0 B |