lgpr
Longitudinal Gaussian Process Regression
Interpretable nonparametric modeling of longitudinal data using additive Gaussian process regression. Contains functionality for inferring covariate effects and assessing covariate relevances. Models are specified using a convenient formula syntax, and can include shared, group-specific, non-stationary, heterogeneous and temporally uncertain effects. Bayesian inference for model parameters is performed using 'Stan'. The modeling approach and methods are described in detail in Timonen et al. (2021) <doi:10.1093/bioinformatics/btab021>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.2.5 |
rolling linux/jammy R-4.5 | lgpr_1.2.5.tar.gz |
2.2 MiB |
1.2.5 |
rolling linux/noble R-4.5 | lgpr_1.2.5.tar.gz |
2.2 MiB |
1.2.5 |
rolling source/ R- | lgpr_1.2.5.tar.gz |
198.8 KiB |
1.2.5 |
latest linux/jammy R-4.5 | lgpr_1.2.5.tar.gz |
2.2 MiB |
1.2.5 |
latest linux/noble R-4.5 | lgpr_1.2.5.tar.gz |
2.2 MiB |
1.2.5 |
latest source/ R- | lgpr_1.2.5.tar.gz |
198.8 KiB |
1.2.5 |
2026-04-26 source/ R- | lgpr_1.2.5.tar.gz |
198.8 KiB |
1.2.5 |
2026-04-23 source/ R- | lgpr_1.2.5.tar.gz |
198.8 KiB |
1.2.5 |
2026-04-09 windows/windows R-4.5 | lgpr_1.2.5.zip |
2.4 MiB |
1.2.4 |
2025-04-20 source/ R- | lgpr_1.2.4.tar.gz |
201.9 KiB |
Dependencies (latest)
Depends
Imports
- Rcpp (>= 0.12.0)
- RcppParallel (>= 5.0.2)
- RCurl (>= 1.98)
- rstan (>= 2.26.0)
- rstantools (>= 2.3.1)
- bayesplot (>= 1.7.0)
- MASS (>= 7.3-50)
- stats (>= 3.4)
- ggplot2 (>= 3.1.0)
- gridExtra (>= 0.3.0)
LinkingTo
- BH (>= 1.75.0-0)
- Rcpp (>= 1.0.6)
- RcppEigen (>= 0.3.3.9.1)
- RcppParallel (>= 5.0.2)
- rstan (>= 2.26.0)
- StanHeaders (>= 2.26.0)