ipADMIXTURE
Iterative Pruning Population Admixture Inference Framework
A data clustering package based on admixture ratios (Q matrix) of population structure. The framework is based on iterative Pruning procedure that performs data clustering by splitting a given population into subclusters until meeting the condition of stopping criteria the same as ipPCA, iNJclust, and IPCAPS frameworks. The package also provides a function to retrieve phylogeny tree that construct a neighbor-joining tree based on a similar matrix between clusters. By given multiple Q matrices with varying a number of ancestors (K), the framework define a similar value between clusters i,j as a minimum number K* that makes majority of members of two clusters are in the different clusters. This K* reflexes a minimum number of ancestors we need to splitting cluster i,j into different clusters if we assign K* clusters based on maximum admixture ratio of individuals. The publication of this package is at Chainarong Amornbunchornvej, Pongsakorn Wangkumhang, and Sissades Tongsima (2020) <doi:10.1101/2020.03.21.001206>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.1.2 |
rolling linux/jammy R-4.5 | ipADMIXTURE_0.1.2.tar.gz |
990.1 KiB |
0.1.2 |
rolling linux/noble R-4.5 | ipADMIXTURE_0.1.2.tar.gz |
990.0 KiB |
0.1.2 |
rolling source/ R- | ipADMIXTURE_0.1.2.tar.gz |
934.5 KiB |
0.1.2 |
latest linux/jammy R-4.5 | ipADMIXTURE_0.1.2.tar.gz |
990.1 KiB |
0.1.2 |
latest linux/noble R-4.5 | ipADMIXTURE_0.1.2.tar.gz |
990.0 KiB |
0.1.2 |
latest source/ R- | ipADMIXTURE_0.1.2.tar.gz |
934.5 KiB |
0.1.2 |
2026-04-26 source/ R- | ipADMIXTURE_0.1.2.tar.gz |
934.5 KiB |
0.1.2 |
2026-04-23 source/ R- | ipADMIXTURE_0.1.2.tar.gz |
934.5 KiB |
0.1.2 |
2026-04-09 windows/windows R-4.5 | ipADMIXTURE_0.1.2.zip |
992.0 KiB |
0.1.0 |
2025-04-20 source/ R- | ipADMIXTURE_0.1.0.tar.gz |
974.0 KiB |