geneExpressionFromGEO
Easily Downloads a Gene Expression Dataset from a GEO Code and Retrieves the Gene Symbols of Its Probesets
A function that reads in the GEO code of a gene expression dataset, retrieves its data from GEO, (optionally) retrieves the gene symbols of the dataset, and returns a simple dataframe table containing all the data. Platforms available: GPL11532, GPL23126, GPL6244, GPL8300, GPL80, GPL96, GPL570, GPL571, GPL20115, GPL1293, GPL6102, GPL6104, GPL6883, GPL6884, GPL13497, GPL14550, GPL17077, GPL6480. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL <https://ftp.ncbi.nlm.nih.gov/geo/series/>. More information can be found in the following manuscript: Davide Chicco, "geneExpressionFromGEO: an R package to facilitate data reading from Gene Expression Omnibus (GEO)". Microarray Data Analysis, Methods in Molecular Biology, volume 2401, chapter 12, pages 187-194, Springer Protocols, 2021, <doi:10.1007/978-1-0716-1839-4_12>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.3 |
rolling linux/jammy R-4.5 | geneExpressionFromGEO_1.3.tar.gz |
9.4 KiB |
1.3 |
rolling linux/noble R-4.5 | geneExpressionFromGEO_1.3.tar.gz |
9.4 KiB |
1.3 |
rolling source/ R- | geneExpressionFromGEO_1.3.tar.gz |
9.4 KiB |
1.3 |
latest linux/jammy R-4.5 | geneExpressionFromGEO_1.3.tar.gz |
9.4 KiB |
1.3 |
latest linux/noble R-4.5 | geneExpressionFromGEO_1.3.tar.gz |
9.4 KiB |
1.3 |
latest source/ R- | geneExpressionFromGEO_1.3.tar.gz |
9.4 KiB |
1.3 |
2026-04-26 source/ R- | geneExpressionFromGEO_1.3.tar.gz |
9.4 KiB |
1.3 |
2026-04-23 source/ R- | geneExpressionFromGEO_1.3.tar.gz |
9.4 KiB |
1.2 |
2025-04-20 source/ R- | geneExpressionFromGEO_1.2.tar.gz |
8.9 KiB |