freqpcr
Estimates Allele Frequency on qPCR DeltaDeltaCq from Bulk Samples
Interval estimation of the population allele frequency from qPCR analysis based on the restriction enzyme digestion (RED)-DeltaDeltaCq method (Osakabe et al. 2017, <doi:10.1016/j.pestbp.2017.04.003>), as well as general DeltaDeltaCq analysis. Compatible with the Cq measurement of DNA extracted from multiple individuals at once, so called "group-testing", this model assumes that the quantity of DNA extracted from an individual organism follows a gamma distribution. Therefore, the point estimate is robust regarding the uncertainty of the DNA yield.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.4.0 |
rolling source/ R- | freqpcr_0.4.0.tar.gz |
536.1 KiB |
0.4.0 |
rolling linux/jammy R-4.5 | freqpcr_0.4.0.tar.gz |
398.9 KiB |
0.4.0 |
latest source/ R- | freqpcr_0.4.0.tar.gz |
536.1 KiB |
0.4.0 |
latest linux/jammy R-4.5 | freqpcr_0.4.0.tar.gz |
398.9 KiB |
0.4.0 |
2026-04-23 source/ R- | freqpcr_0.4.0.tar.gz |
536.1 KiB |
0.4.0 |
2026-04-09 windows/windows R-4.5 | freqpcr_0.4.0.zip |
398.9 KiB |
0.4.0 |
2025-04-20 source/ R- | freqpcr_0.4.0.tar.gz |
538.9 KiB |