fitPoly
Genotype Calling for Bi-Allelic Marker Assays
Genotyping assays for bi-allelic markers (e.g. SNPs) produce signal intensities for the two alleles. 'fitPoly' assigns genotypes (allele dosages) to a collection of polyploid samples based on these signal intensities. 'fitPoly' replaces the older package 'fitTetra' that was limited (a.o.) to only tetraploid populations whereas 'fitPoly' accepts any ploidy level. Reference: Voorrips RE, Gort G, Vosman B (2011) <doi:10.1186/1471-2105-12-172>. New functions added on conversion of data from SNP array software formats, drawing of XY-scatterplots with or without genotype colors, checking against expected F1 segregation patterns, comparing results from two different assays (probes) for the same SNP, recovery from a saveMarkerModels() crash.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
4.0.0 |
rolling source/ R- | fitPoly_4.0.0.tar.gz |
1.5 MiB |
4.0.0 |
latest source/ R- | fitPoly_4.0.0.tar.gz |
1.5 MiB |
4.0.0 |
2026-04-23 source/ R- | fitPoly_4.0.0.tar.gz |
1.5 MiB |
4.0.0 |
2026-04-09 windows/windows R-4.5 | fitPoly_4.0.0.zip |
1.7 MiB |