coalescentMCMC
MCMC Algorithms for the Coalescent
Flexible framework for coalescent analyses in R. It includes a main function running the MCMC algorithm, auxiliary functions for tree rearrangement, and some functions to compute population genetic parameters. Extended description can be found in Paradis (2020) <doi:10.1201/9780429466700>. For details on the MCMC algorithm, see Kuhner et al. (1995) <doi:10.1093/genetics/140.4.1421> and Drummond et al. (2002) <doi:10.1093/genetics/161.3.1307>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.4-4 |
rolling linux/jammy R-4.5 | coalescentMCMC_0.4-4.tar.gz |
478.9 KiB |
0.4-4 |
rolling linux/noble R-4.5 | coalescentMCMC_0.4-4.tar.gz |
478.8 KiB |
0.4-4 |
rolling source/ R- | coalescentMCMC_0.4-4.tar.gz |
409.8 KiB |
0.4-4 |
latest linux/jammy R-4.5 | coalescentMCMC_0.4-4.tar.gz |
478.9 KiB |
0.4-4 |
latest linux/noble R-4.5 | coalescentMCMC_0.4-4.tar.gz |
478.8 KiB |
0.4-4 |
latest source/ R- | coalescentMCMC_0.4-4.tar.gz |
409.8 KiB |
0.4-4 |
2026-04-26 source/ R- | coalescentMCMC_0.4-4.tar.gz |
409.8 KiB |
0.4-4 |
2026-04-23 source/ R- | coalescentMCMC_0.4-4.tar.gz |
409.8 KiB |
0.4-4 |
2026-04-09 windows/windows R-4.5 | coalescentMCMC_0.4-4.zip |
485.2 KiB |
0.4-4 |
2025-04-20 source/ R- | coalescentMCMC_0.4-4.tar.gz |
409.8 KiB |