cancerGI
Analyses of Cancer Gene Interaction
Functions to perform the following analyses: i) inferring epistasis from RNAi double knockdown data; ii) identifying gene pairs of multiple mutation patterns; iii) assessing association between gene pairs and survival; and iv) calculating the smallworldness of a graph (e.g., a gene interaction network). Data and analyses are described in Wang, X., Fu, A. Q., McNerney, M. and White, K. P. (2014). Widespread genetic epistasis among breast cancer genes. Nature Communications. 5 4828. <doi:10.1038/ncomms5828>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.0.1 |
rolling source/ R- | cancerGI_1.0.1.tar.gz |
547.3 KiB |
1.0.1 |
rolling linux/jammy R-4.5 | cancerGI_1.0.1.tar.gz |
547.3 KiB |
1.0.1 |
latest source/ R- | cancerGI_1.0.1.tar.gz |
547.3 KiB |
1.0.1 |
latest linux/jammy R-4.5 | cancerGI_1.0.1.tar.gz |
547.3 KiB |
1.0.1 |
2026-04-23 source/ R- | cancerGI_1.0.1.tar.gz |
547.3 KiB |
1.0.1 |
2025-04-20 source/ R- | cancerGI_1.0.1.tar.gz |
547.3 KiB |