biocompute
Create and Manipulate BioCompute Objects
Tools to create, validate, and export BioCompute Objects described in King et al. (2019) <doi:10.17605/osf.io/h59uh>. Users can encode information in data frames, and compose BioCompute Objects from the domains defined by the standard. A checksum validator and a JSON schema validator are provided. This package also supports exporting BioCompute Objects as JSON, PDF, HTML, or 'Word' documents, and exporting to cloud-based platforms.
README
# IEEE 2791 Object Schema IEEE 2791 Object Schema is intended for use as part of IEEE 2791 Std., *Standard for Bioinformatics Computations and Analyses Generated by High-Throughput Sequencing (HTS) to Facilitate Communication.* IEEE Std 2791™-2020 normatively references Version 1.4 of ieee-2791-schema. ## License All source files (.json files) in this repository are subject to the following copyright and licensing terms. > Copyright 2020 IEEE 2791 Object Schema Authors > > Redistribution and use in source and binary forms, with or without > modification, are permitted provided that the following conditions are > met: > > * Redistributions of source code must retain the above copyright > notice, this list of conditions and the following disclaimer. > > * Redistributions in binary form must reproduce the above copyright > notice, this list of conditions and the following disclaimer in the > documentation and/or other materials provided with the distribution. > > * Neither the name of the copyright holder nor the names of its > contributors may be used to endorse or promote products derived from > this software without specific prior written permission. > > THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS > "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT > LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR > A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT > HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, > SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT > LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, > DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY > THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT > (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE > OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. > > SPDX-License-Identifier: BSD-3-Clause See the LICENSE file distributed with this work for copyright and licensing information, the AUTHORS file for a list of copyright holders, and the CONTRIBUTORS file for the list of contributors.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.1.1 |
2026-04-09 windows/windows R-4.5 | biocompute_1.1.1.zip |
609.0 KiB |