WhiteLabRt
Novel Methods for Reproduction Number Estimation, Back-Calculation, and Forecasting
A collection of functions related to novel methods for estimating R(t), created by the lab of Professor Laura White. Currently implemented methods include two-step Bayesian back-calculation and now-casting for line-list data with missing reporting delays, adapted in 'STAN' from Li (2021) <doi:10.1371/journal.pcbi.1009210>, and calculation of time-varying reproduction number assuming a flux between various adjacent states, adapted into 'STAN' from Zhou (2021) <doi:10.1371/journal.pcbi.1010434>.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
1.0.1 |
rolling linux/jammy R-4.5 | WhiteLabRt_1.0.1.tar.gz |
5.3 MiB |
1.0.1 |
rolling linux/noble R-4.5 | WhiteLabRt_1.0.1.tar.gz |
5.4 MiB |
1.0.1 |
rolling source/ R- | WhiteLabRt_1.0.1.tar.gz |
4.0 MiB |
1.0.1 |
latest linux/jammy R-4.5 | WhiteLabRt_1.0.1.tar.gz |
5.3 MiB |
1.0.1 |
latest linux/noble R-4.5 | WhiteLabRt_1.0.1.tar.gz |
5.4 MiB |
1.0.1 |
latest source/ R- | WhiteLabRt_1.0.1.tar.gz |
4.0 MiB |
1.0.1 |
2026-04-26 source/ R- | WhiteLabRt_1.0.1.tar.gz |
4.0 MiB |
1.0.1 |
2026-04-23 source/ R- | WhiteLabRt_1.0.1.tar.gz |
4.0 MiB |
1.0.1 |
2025-04-20 source/ R- | WhiteLabRt_1.0.1.tar.gz |
4.0 MiB |
Dependencies (latest)
Imports
- methods
- Rcpp (>= 0.12.0)
- RcppParallel (>= 5.0.1)
- rstan (>= 2.18.1)
- rstantools (>= 2.4.0)
LinkingTo
- BH (>= 1.66.0)
- Rcpp (>= 0.12.0)
- RcppEigen (>= 0.3.3.3.0)
- RcppParallel (>= 5.0.1)
- rstan (>= 2.18.1)
- StanHeaders (>= 2.18.0)