TopDom
An Efficient and Deterministic Method for Identifying Topological Domains in Genomes
The 'TopDom' method identifies topological domains in genomes from Hi-C sequence data (Shin et al., 2016 <doi:10.1093/nar/gkv1505>). The authors published an implementation of their method as an R script (two different versions; also available in this package). This package originates from those original 'TopDom' R scripts and provides help pages adopted from the original 'TopDom' PDF documentation. It also provides a small number of bug fixes to the original code.
Versions across snapshots
| Version | Repository | File | Size |
|---|---|---|---|
0.10.1 |
rolling linux/jammy R-4.5 | TopDom_0.10.1.tar.gz |
4.3 MiB |
0.10.1 |
rolling linux/noble R-4.5 | TopDom_0.10.1.tar.gz |
4.3 MiB |
0.10.1 |
rolling source/ R- | TopDom_0.10.1.tar.gz |
4.2 MiB |
0.10.1 |
latest linux/jammy R-4.5 | TopDom_0.10.1.tar.gz |
4.3 MiB |
0.10.1 |
latest linux/noble R-4.5 | TopDom_0.10.1.tar.gz |
4.3 MiB |
0.10.1 |
latest source/ R- | TopDom_0.10.1.tar.gz |
4.2 MiB |
0.10.1 |
2026-04-26 source/ R- | TopDom_0.10.1.tar.gz |
4.2 MiB |
0.10.1 |
2026-04-23 source/ R- | TopDom_0.10.1.tar.gz |
4.2 MiB |
0.10.1 |
2026-04-09 windows/windows R-4.5 | TopDom_0.10.1.zip |
4.3 MiB |
0.10.1 |
2025-04-20 source/ R- | TopDom_0.10.1.tar.gz |
4.2 MiB |